Welcome. It looks like you have quite a job in front of you. Regarding photos; it sometimes helps to have a general overall photo with locations noted as well as the detail photos. I am just speaking for myself, but I do not have color codes and wiring configurations committed to memory🥴.
That said, a couple of things are obvious and that is the area of the brake system in the engine bay has been converted to some sort of standard type brakes. The original anti-lock system is missing and the photo of the cluster of harness plugs is what used to plug into the motor and anti-lock module. You will probably have multiple warning lights related to brakes.
I see the corner of what appears to be a cone type air inlet filter, and the sensor out in the open is probably the inlet air temperature, which is installed in the stock air filter housing.
I do not know what is being referred to as an aftermarket MAF, but the photo appears to be the stock style setup with the protective loom covering missing from the last portion of the harness to the plug.